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https://biblioteca.cenicafe.org/handle/10778/4400| Title: | HevaGF: genomic features from evidence based gene calling of Hemileia vastatrix (Race I), causative agent of the coffee leaf rust |
| Other Titles: | HevaGF: características genómicas derivadas del llamado de genes basado en evidencia de Hemileia vastatrix (Race I), agente causante de la roya del café. |
| Authors: | MALDONADO L., C.E. MARIN R., G.A. ANGEL C., C.A. |
| Keywords: | Genoma Roya Hemileia vastatrix |
| Issue Date: | 15-Jun-2023 |
| Publisher: | Cenicafé |
| Citation: | Maldonado, C. E., Marín-Ramírez, G., & Ángel, C. A. (2023). HevaGF: genomic features from evidence based gene calling of Hemileia vastatrix (Race I), causative agent of the coffee leaf rust [Data set]. Cenicafé. https://doi.org/10.38141/10799/dataset02 |
| Abstract: | Gene evidence-based annotation was performed by Augustus (Stanke et al. 2006a, 2006b, 2008) using more than 44 M transcripts (Illumina PE-150) obtained from RNAseq experiments of inoculated coffee leaves at different disease development stages. These transcripts were obtained from a series of projects conducted by Plant Pathology – CENICAFE and from public data stored on the SRA database of NCBI. In total, 12,870 genes were called on the transposable elements masked sequence and 82% of those genes were distributed on 19 scaffolds larger than 10 Mb. |
| Description: | La anotación basada en evidencia de transcripción se llevó a cabo mediante el uso de Augustus (Stanke et al., 2006a, 2006b, 2008), se utilizaron más de 44 millones de transcritos (Illumina PE-150), obtenidos de experimentos de RNAseq de hojas de café inoculadas en diferentes etapas de desarrollo de la enfermedad. Se utilizaron transcritos obtenidos de experimentos realizados por la Disciplina de Fitopatología - CENICAFE y de datos almacenados en la base de datos pública SRA de NCBI. En total, se identificaron 12,870 genes en la secuencia enmascarada de elementos transponibles y el 82% de esos genes se distribuyeron en 19 scaffolds mayores de 10 Mb. |
| URI: | https://biblioteca.cenicafe.org/handle/10778/4400 |
| Appears in Collections: | DataSet Collection |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| HevaGF_GCA_030280995_Hv_R1_Cat_CENPAT_20230621.gff | 15.07 MB | Unknown | View/Open |
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